A video explaining and demonstrating the use of this web resource: YouTube video The IGV JSON files for use to view BAM/VCF/BED files in the context of the annotation for the TB-T2T, EquAss-T2T_v2, and the Mule genomes can be found on our IGV .genome files page.
| Datatype | Mapped to TB-T2T | Mapped to EquAss-T2T_v2 |
|---|---|---|
| Mare WGS | HorseMare.WGS.TB-T2T.bam | XXXXX |
| Sire WGS | XXXXX | DonkeySire.WGS.EquAss-T2T_v2.bam |
| Mule WGS | Mule WGS vs. TB-T2T.bam | Mule WGS vs. EquAss-T2T_v2.bam |
| Mule HiC | Mule HiC vs TB-T2T.bam | Mule HiC vs EquAss-T2T_v2.bam |
| Mule HiFi | Mule HiFi vs TB-T2T.bam | Mule HiFi vs EquAss-T2T_v2.bam |
| Mule ONT | Mule ONT vs TB-T2T.bam | Mule ONT vs EquAss-T2T_v2.bam |
| Datatype | Assembly | URL |
|---|---|---|
| BED file | TB-T2T | Additional_file_1_horse_37cen.bed |
| BED file | TB-T2T | Additional_file_2_horse_CENPB-sat.bed |
| BED file | TB-T2T | Additional_file_3_horse_2PI.bed |
| BED file | TB-T2T | Additional_file_4_horse_EC137.bed |
| BED file | TB-T2T | Additional_file_5_horse_SatA.bed |
| BED file | TB-T2T | Additional_file_6_horse_SatB.bed |
| BED file | EquAss-T2T_v2 | Additional_file_7_donkey_37cen.bed |
| BED file | EquAss-T2T_v2 | Additional_file_8_donkey_CENPB-sat.bed |
| BED file | EquAss-T2T_v2 | Additional_file_9_donkey_2PI.bed |
| BED file | EquAss-T2T_v2 | Additional_file_10_donkey_2PI-telo.bed |
| BED file | EquAss-T2T_v2 | Additional_file_11_donkey_EC137.bed |
| BED file | EquAss-T2T_v2 | Additional_file_12_donkey_SatA.bed |
| BED file | EquAss-T2T_v2 | Additional_file_13_donkey_SatB.bed |
| BED file | EquAss-T2T_v2 | Additional_file_14_donkey_SatC.bed |
| BED file | EquAss-T2T_v2 | Additional_file_15_donkey_SatD.bed |
| TSV file | TB-T2T | Axiom_MNEc670_ProbeMappingsToTB-T2T |
| Assembly | Tissue | URL |
|---|---|---|
| Mule | Cerebellar Vermis | IsoSeq.Mule.C_Vermis.bam |
| Mule | Esophagus | IsoSeq.Mule.Esophagus.bam |
| Mule | Heart:Left Atrium | IsoSeq.Mule.Heart_Left_Atrium.bam |
| Mule | Heart:Left Ventricle | IsoSeq.Mule.Heart_Left_Ventricle.bam |
| Mule | Hypothalamus | IsoSeq.Mule.Hypothalamus.bam |
| Mule | Kidney Cortex | IsoSeq.Mule.Kidney_Cortex.bam |
| Mule | Lamina Front | IsoSeq.Mule.Lamina_Front.bam |
| Mule | Left Adrenal Cortex | IsoSeq.Mule.Left_Adrenal_Cortex.bam |
| Mule | Loin Adipose | IsoSeq.Mule.Loin_Adipose.bam |
| Mule | Long Bone Marrow | IsoSeq.Mule.Long_Bone_Marrow.bam |
| Mule | Lung: Upper Left Lobe | IsoSeq.Mule.Lung_Upper_Left_Lobe.bam |
| Mule | PBMC | IsoSeq.Mule.PBMC.bam |
| Mule | Pituitary | IsoSeq.Mule.Pituitary.bam |
| Mule | Spleen | IsoSeq.Mule.Spleen.bam |